Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  163 bits (412), Expect = 3e-45
 Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60
           M+ILV+ED+  +   +L  LE  G+V + AQDG+  L+ A  E +D+IVLD+ LP +DGL
Sbjct: 1   MRILVIEDNRDILANVLDYLELKGYVVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGL 60

Query: 61  TVLKGIR-DENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRA 119
            V K +R D   +TP+++L+ARD L  R++GL AGADDYL KPF + EL+ARI A LRR+
Sbjct: 61  QVCKRLREDAGRDTPIIMLTARDALADRLQGLGAGADDYLVKPFALSELVARIEAVLRRS 120

Query: 120 SGNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIY 179
            G+    +QVGDL  D  T +    GQ + L  + +K++A  M     V+ R +L E ++
Sbjct: 121 QGSRKNKLQVGDLQYDLDTLQATRAGQPLRLNPIGHKLLAILMQKSPAVVRREQLEEALW 180

Query: 180 KQDFDRDSNTIEVFIGRIR----KKIAPDVIKTVRGLGYQL 216
             D   DS+++   I ++R    K  A  ++ TV G+G++L
Sbjct: 181 GNDVP-DSDSLRSHIHQLRQVLDKPFATPLLHTVHGVGFRL 220