Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (410), Expect = 5e-45
 Identities = 86/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%)

Query: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60
           M+ILVVEDD  L   +   L + G   ++AQ   +  Y+AT    D+ ++DLGLP  DG+
Sbjct: 1   MRILVVEDDPLLSHHLKVQLSELGNQVQVAQTAKEGFYQATNYPIDIAIIDLGLPDQDGI 60

Query: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120
           ++++ +R   +  P++IL+AR     +VEGLNAGADDYL KPF+  EL+AR+ A +RR++
Sbjct: 61  SLIQSLRKAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180
           G   P +  G L LD    +V      + +TA EY+++ Y M +  +V+++  L++ IY 
Sbjct: 121 GFVKPQITSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 QDFDRDSNTIEVFIGRIRKKIA----PDVIKTVRGLGYQLH 217
            D + D NTIEV + R+RKK+      + I T+RG GY+ +
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTKGGLENPIATIRGQGYKFN 220