Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  164 bits (415), Expect = 1e-45
 Identities = 84/220 (38%), Positives = 139/220 (63%), Gaps = 3/220 (1%)

Query: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60
           MK+L+VED+  L  ++   L+Q G+V ++     +A Y      +D ++LD+GLP  +GL
Sbjct: 1   MKLLLVEDNTLLVDELAKQLKQAGYVTDVTDRAAEADYLIKETHYDCVILDIGLPDGNGL 60

Query: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120
            +L+  R++ I+TPV++L+AR    ++VEG NAGADDYL KPF   EL+ARI A + RA 
Sbjct: 61  QLLETWRNQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHALINRAH 120

Query: 121 GNA-SPVMQVG--DLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEH 177
           G   SP  ++    ++LD     V    Q   LTA+E++++  F+ +P+K++S+ +L + 
Sbjct: 121 GKTNSPTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 IYKQDFDRDSNTIEVFIGRIRKKIAPDVIKTVRGLGYQLH 217
           +Y+ D +++SN +EV++  +RKK+    I+T RG GY  H
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIFH 220