Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (512), Expect = 7e-57
 Identities = 103/220 (46%), Positives = 154/220 (70%), Gaps = 4/220 (1%)

Query: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60
           M++L+VEDDV L   +   L    +  ++A DG + L++A    +D  ++D+GLPKLDG+
Sbjct: 1   MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGI 60

Query: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120
           ++++ IR +    P++IL+ARD+   +VEGL+AGADDYLTKPF   EL+AR++A +RR++
Sbjct: 61  SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180
           G ASP++  G  SL+T + +V  +G+ V+L+  EYK+   FM +  +V S+T L EHIY 
Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 QDFDRDSNTIEVFIGRIRKKIAPD----VIKTVRGLGYQL 216
           QDFD DSN IEVFI R+RKK+ PD    +I+T+RG GY+L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220