Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  172 bits (437), Expect = 3e-48
 Identities = 85/220 (38%), Positives = 143/220 (65%), Gaps = 3/220 (1%)

Query: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60
           MK+L+VED+  L  ++   L+Q G+V ++    ++A Y     ++D ++LD+GLP  +GL
Sbjct: 1   MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQYDCVILDIGLPDGNGL 60

Query: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120
            +L+G R++ I+TPV++L+AR    ++VEG NAGADDYL KPF   EL+ARI+A + RA 
Sbjct: 61  ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120

Query: 121 G---NASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEH 177
           G   N +  +  G ++LD     V    Q   LTA+E++++  F+ +P+K++S+ +L + 
Sbjct: 121 GRLNNPNKQLSYGGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 IYKQDFDRDSNTIEVFIGRIRKKIAPDVIKTVRGLGYQLH 217
           +Y+ D +++SN +EV++  +RKK+    I+T RG GY  H
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIFH 220