Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2E2

 Score = 48.5 bits (114), Expect = 9e-10
 Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 35/220 (15%)

Query: 189 LLDEGFLTPAQLIDTPVMSYDFSQLKP------ANTGRYRESELDLVIEQSQRAT----P 238
           L++ GF  P+ L + P+   ++  + P      A  G Y       V+EQ  R T    P
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDP 419

Query: 239 QI------------VAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVI---GDT 283
           Q+            +++I +     + V++   T R AE++   L  +H   V     D 
Sbjct: 420 QVEVRPALTQVDDLLSEISKRVALEERVLVTTLTKRMAEDLTDYL-ADHGVRVRYLHSDI 478

Query: 284 PTPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ-----QIVG 338
            T ER  II+  +      LV +++L  G D P V L+AIL   +   L       Q +G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538

Query: 339 RGLRLAAGKSDCLVLDYAGNQYDLYQPEVGDPKPDSDSEI 378
           R  R   G++    + YA       +  +G+ +   D +I
Sbjct: 539 RAARNLNGRA----ILYADRITGSMERAIGETERRRDKQI 574



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 8  QADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQNHAK 67
          Q ++++ +V           ++  TG+GK+  IA +    +   LVLA  K L  Q + +
Sbjct: 16 QPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLAPNKTLAAQLYGE 75

Query: 68 YEGYGLTGAI 77
          ++ +    A+
Sbjct: 76 FKAFFPNNAV 85