Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., DNA or RNA helicases of superfamily II from Pseudomonas stutzeri RCH2

 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 93/418 (22%), Positives = 165/418 (39%), Gaps = 51/418 (12%)

Query: 3   TLRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELAR--LARGRV-LVLAHVKE 59
           +LR +Q   +   + +F   S       P GAGK+ + AELAR  L +GR+ LVL     
Sbjct: 4   SLRDWQRRCINTALEHFLSTSHFFCQATP-GAGKTRMAAELARNLLDQGRIDLVLCFAPS 62

Query: 60  LVEQNHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLL------ 113
                    EG+  T   F A LGR+  D Q+         + +   +  F  L      
Sbjct: 63  C-----QVVEGFRST---FMAVLGRR-LDGQLGAVGAAYTYQAMDYREEAFWQLLDDYRV 113

Query: 114 --VIDECHRV----PDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRG 167
             V DE H      P   N+  Q+++  + +       L L+ TP+R     I       
Sbjct: 114 FVVFDEIHHCAGHDPLLSNAWGQQILQRVQDR--AACTLALSGTPWRSDDRAI------A 165

Query: 168 LVRSEEPRFFRDCIFELPIHYLLDEGFLTPAQLIDTPVMSYDFSQ-LKPANTGRYRESEL 226
           L R   P     C F   +   + +G     +++         ++ L+  +T R   S  
Sbjct: 166 LARYSSPEGQLICDFRYGLKEAIADGVCRSPRIVLLDNQQVKLTEELQAESTVRLFPSIA 225

Query: 227 DLVIE-----QSQRATPQIVAQIIELAKARQGVM----------IFAATVRHAEEIYRLL 271
            L+ E     +      +++ Q++ L +A+  V+          + +  + HA +I + L
Sbjct: 226 KLLGESPVTYEELLRHDEVIDQLLILGRAKLDVLRQIKPDAAGLVVSTDIEHARQIAQAL 285

Query: 272 PTEHAALVIGDTPTPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVS 331
                +  I    TP+  ++I  F+    +++V V +++ G D P + +   L    +  
Sbjct: 286 EAMGESCQIVTNRTPDAQQLINTFRHSDCRWIVAVGMISEGTDIPRLQVCCYLSRIRTEL 345

Query: 332 LYQQIVGRGLRLAAGKSD-CLVLDYAGNQYDLYQPEVGDPKPDSDSEI-ITIPCPACG 387
            Y+Q++GR LR   G  D   +   A      +   + D  PD  + + + +P PA G
Sbjct: 346 HYRQVLGRVLRRKDGSDDQAWLFMLAEPTLRRFAERIADDLPDDMAVLSVQVPDPASG 403