Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

 Score = 45.8 bits (107), Expect = 6e-09
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 29/189 (15%)

Query: 189 LLDEGFLTPAQLIDTPVMSYDFSQLKP------ANTGRYRESELDLVIEQSQRAT----P 238
           L++ GF  P+ L + P+   ++  + P      A  G Y       V+EQ  R T    P
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDP 419

Query: 239 QI------------VAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAAL--VIGDTP 284
           QI            +++I +     + V++   T R AE++   L      +  +  D  
Sbjct: 420 QIEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDID 479

Query: 285 TPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ-----QIVGR 339
           T ER  II+  +      LV +++L  G D P V L+AIL   +   L       Q +GR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 340 GLRLAAGKS 348
             R   G++
Sbjct: 540 AARNLNGRA 548



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 15/70 (21%), Positives = 34/70 (48%)

Query: 8  QADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQNHAK 67
          Q ++++ ++       +   ++  TG+GK+  IA +    +   LVLA  K L  Q + +
Sbjct: 16 QPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLAPNKTLAAQLYGE 75

Query: 68 YEGYGLTGAI 77
          ++ +    A+
Sbjct: 76 FKAFFPNNAV 85