Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella amazonensis SB2B

 Score =  550 bits (1418), Expect = e-161
 Identities = 293/571 (51%), Positives = 378/571 (66%), Gaps = 12/571 (2%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQ 63
           LR YQ D+++A + +FR     A++VLPTGAGKSLVIAELARLA+GRVLVL HVKELV Q
Sbjct: 15  LRDYQQDAIEATLAHFRTSRESALLVLPTGAGKSLVIAELARLAKGRVLVLTHVKELVAQ 74

Query: 64  NHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLLVIDECHRVPD 123
           N  K +      +IFSAGLG K++  + V A +QS   N++ F   FSL++IDECHRV  
Sbjct: 75  NAQKVDALAGNASIFSAGLGEKDSGGKTVVAGIQSAAVNVAAFDEPFSLVIIDECHRVSL 134

Query: 124 DKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDCIFE 183
           D+NS Y++V + L E NP + +LGLTATPYRLG G IY+ H RG V + +   F  CIFE
Sbjct: 135 DENSQYRQVFSQLREKNPDLLLLGLTATPYRLGEGAIYKRHVRGHVGNPDKGVFDVCIFE 194

Query: 184 LPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQ 243
           LPI  L+ +G+LT   L+D     Y+F+ LK +    Y+E+E+  +++ S RAT  I+ Q
Sbjct: 195 LPIRSLIKQGYLTEPLLLDGLAAQYNFAALKASEDADYQEAEVQAILDTSTRATTTIMGQ 254

Query: 244 IIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVIGDTPTPERDRIIQAFKQQQIKFL 303
           +  LA+ R GV+IFAATVRHA+EI  LL  E AAL+  DTP PERD II AFK Q++KFL
Sbjct: 255 LKALAQQRLGVIIFAATVRHAKEIMALL-DESAALITADTPGPERDNIITAFKAQELKFL 313

Query: 304 VNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQYDLY 363
           VNV+VLTTGFDAPHVDLIAILRPT SVSL+QQ+VGRGLRL  GK++CL+LDYA N + LY
Sbjct: 314 VNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRLFPGKAECLILDYAANGFSLY 373

Query: 364 QPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDANGFLIEHYGRRCQGYFTDDETGERE 423
            P+VG P+PDS S  + +PCPACGF N FWGK D +G +IEHYGRRCQG   D       
Sbjct: 374 HPDVGKPRPDSKSVPVQVPCPACGFANLFWGKADTDGDIIEHYGRRCQGLLDDG-----N 428

Query: 424 HCGYRFRAKYCNECGADNDIAARICHECDTTLVDPDKKLKEALNLKDALVFECTDMSLKV 483
            C +RFRA+ C +CGA+NDIAAR+C  CD+ LVDPDK LK  L  K   +F+ TDM L  
Sbjct: 429 QCDFRFRARICPDCGAENDIAARVCRGCDSALVDPDKHLKAVLAHKHHHLFKVTDMLL-- 486

Query: 484 HKDAKGKSQLQVTYHGQDAVQVHQFWPLNTPRQKQQFHDQFVRPHLADKHRPFEAATPAK 543
                  + L+VTY   D     + + + TP Q++  +  F+  H             AK
Sbjct: 487 ---GATDAGLEVTYLDMDGNSFIERFKMQTPGQRKALYALFLLRHQRAPGLALPKYPDAK 543

Query: 544 -VVDHQHRFRPPLFVIARKSGRFWTIRDKVF 573
            ++    +FR P  ++ +KS   W + DK F
Sbjct: 544 ALIKDSAKFRAPELLLLKKSKFGWQLVDKFF 574