Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score =  548 bits (1412), Expect = e-160
 Identities = 283/573 (49%), Positives = 377/573 (65%), Gaps = 12/573 (2%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQ 63
           LR YQ  +V A +++F++    A++VLPTGAGKS+VIAELAR+A+GR LVL HVKELV Q
Sbjct: 3   LRDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSIVIAELARIAKGRTLVLTHVKELVAQ 62

Query: 64  NHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLLVIDECHRVPD 123
           N  K        +IFSAGL +K T  + V AS+QS VRN  +F   +SL++IDECHRV +
Sbjct: 63  NAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNPKQFDEPYSLVIIDECHRVSN 122

Query: 124 DKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDCIFE 183
           +K S YQ++++HL   N  +++LGLTATPYRLG GWIY+YH  G + + E   F  CIFE
Sbjct: 123 EKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCIFE 182

Query: 184 LPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQ 243
           LP+  L+ +GFLTP +++D     YDFS+L P   G Y E+E+D ++  + RAT  IV Q
Sbjct: 183 LPMRPLIKQGFLTPPKVLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIVEQ 242

Query: 244 IIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVIGDTPTPERDRIIQAFKQQQIKFL 303
           I +L   R G +IFAATVRHA+EI  LL +  A L+  DTP+ ERD II AFK++++ +L
Sbjct: 243 IKQLTNTRAGTIIFAATVRHAKEIMTLLDSPEAGLITADTPSQERDAIIDAFKRRELSYL 302

Query: 304 VNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQYDLY 363
           VNV+VLTTGFDAPHVDLIAILRPT SVSL+QQ+VGRGLR+  GK DCLV+DYA N +DL+
Sbjct: 303 VNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKRDCLVIDYAANGFDLF 362

Query: 364 QPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDANGFLIEHYGRRCQGYFTDDETGERE 423
            PEVG PKPDS S  + +PCP CGF N FWG +D +G +IEH+GRRCQ    DD  G+ +
Sbjct: 363 FPEVGRPKPDSKSVPVQVPCPECGFANVFWGLVDGDGDIIEHFGRRCQA-VVDDGDGKHQ 421

Query: 424 HCGYRFRAKYCNECGADNDIAARICHECDTTLVDPDKKLKEALNLKDALVFECTDMSLKV 483
            C +RFRAK C  CG +NDIAA++C  C +TL+DPDK+LKE L  K   +F C +M  + 
Sbjct: 422 -CDFRFRAKACPNCGEENDIAAKVCQHCQSTLIDPDKRLKEVLQQKHHHLFRCQEMLFEA 480

Query: 484 HKDAKGKSQLQVTYHGQDAVQVHQFWPLNTPRQKQQFHDQFVRPHL---ADKHRPFEAAT 540
             D     +L+V Y   +      ++   T  Q + F+  FV  H      K   F    
Sbjct: 481 DND-----RLRVRYLDIEGNDFCCYFNFATKAQIRAFYGVFVHQHTRTPGQKQPTFSKVD 535

Query: 541 PAKVVDHQHRFRPPLFVIARKSGRFWTIRDKVF 573
             +V+  +  FR P  ++ +K  R W + +  F
Sbjct: 536 --QVIAARDYFRMPDLLLLKKGKRGWELVESFF 566