Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

 Score = 49.3 bits (116), Expect = 5e-10
 Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 33/210 (15%)

Query: 189 LLDEGFLTPAQLIDTPVMSYDFSQLK------PANTGRYRESELDLVIEQSQRAT----P 238
           L+D GF  P+   + P+   +F +         A  G Y     + V+EQ  R T    P
Sbjct: 359 LIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDP 418

Query: 239 QIVAQIIE------------LAKARQGVMIFAATVRHAEEIYRLLPTEH--AALVIGDTP 284
           ++  + IE            + +  + V+I   T R AEE+   L   +  A  +  D  
Sbjct: 419 EVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDID 478

Query: 285 TPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ-----QIVGR 339
           T ER  II+  +  +   LV +++L  G D P V  + IL   +   L       Q +GR
Sbjct: 479 TIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGR 538

Query: 340 GLRLAAGKSDCLVLDYAGNQYDLYQPEVGD 369
             R A  K    V+ YAG   D  +  V +
Sbjct: 539 AARNANSK----VVLYAGKMTDSIKKAVSE 564



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 32 TGAGKSLVIAELARLARGRVLVLAHVKELVEQNHAKYEGY 71
          TG+GK+  IA +    +   LV+AH K L  Q + +++ +
Sbjct: 44 TGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEF 83