Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., type I restriction-modification system, R subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 73/398 (18%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 58
           LR YQ  ++ AV     Q +T  ++ + TG GK+  +I  + R  +     R+L L    
Sbjct: 459 LRDYQQKAIAAVESALAQDNTQCLLAMATGTGKTRTIIGLMYRFLKAERFRRILFLVDRT 518

Query: 59  ELVEQ-----NHAKYEGYGLTGAIFS-AGLG--RKETDQQVVFASVQSVVRNLSEFQN-- 108
            L EQ     + AK E   +  +I++ A LG  + E + ++  A+VQ++V+ +    N  
Sbjct: 519 ALGEQACDSFDEAKLEQNKVLSSIYNIAELGDMKSEAETRIQVATVQAMVKRIFMSDNPP 578

Query: 109 ---QFSLLVIDECHR-------------VPDDKN---SSYQKVITHLLELNPGMKVLGLT 149
              +F  +++DE HR                D +   SSY++V+ +   +      +GLT
Sbjct: 579 PLDEFDCIIVDEAHRGYALDQQMTEGELATRDASQYLSSYRRVLDYFDAVR-----IGLT 633

Query: 150 ATPYR----LGMGWIYQYHTRGLVRSEEPRFFRDCIFELPIHY--LLDEGFLTPAQLIDT 203
           ATP +    +    +Y Y  R  V  +   +  D   E PI Y  LL++  +   +    
Sbjct: 634 ATPAKHTSEIFGKPVYTYSYREAVAGD---WLID--HEPPIRYETLLNKHGIKFEKGETV 688

Query: 204 PVMSYDFSQLKPANTGRYRESELDLVIEQ-SQRATPQIVAQII--ELAK-----ARQGVM 255
             ++    +++ A+     E EL   +E  ++R   +   ++I  EL K       +  M
Sbjct: 689 TSINTQTGEIETADL----EDELKFDVESFNKRVITESFNEVICQELIKELDPFGDEKTM 744

Query: 256 IFAATVRHAEEIYRLLPTEHAALVIGD-------TPTPERDRIIQAFKQQQIK----FLV 304
           IF AT  HA+ + RLL      +   D         T + D++ Q  +Q + +      +
Sbjct: 745 IFCATDVHADMVKRLLDKAFLDMYGDDYNQAAVAKITGQSDKVSQLIRQYKNERYPNIAI 804

Query: 305 NVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 342
            V +L+TG D P +  +  LR  +S  LY+Q++GR  R
Sbjct: 805 TVDLLSTGIDVPKICHLVFLRRVKSRILYEQMMGRATR 842