Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

 Score =  544 bits (1402), Expect = e-159
 Identities = 285/574 (49%), Positives = 380/574 (66%), Gaps = 11/574 (1%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQ 63
           LR YQ  +V A + +F++ +  AV+VLPTGAGKS+VIAELAR+ARGRVLVL HVKELV Q
Sbjct: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKELVAQ 70

Query: 64  NHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLLVIDECHRVPD 123
           N  K        +I+SAGL +K +  + V AS+QS  R L +F   FSL++IDECHRV  
Sbjct: 71  NAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHRVSL 130

Query: 124 DKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDCIFE 183
           +K S YQ++++HL + NP +K+LGLTATPYRLG GWIY+ H  G V S E   F  CIFE
Sbjct: 131 EKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQCIFE 190

Query: 184 LPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQ 243
           LPI  L+ +G+LT   L D     YDFSQ+K    G Y E++++ ++  + RAT  IV Q
Sbjct: 191 LPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAIVKQ 250

Query: 244 IIELAKARQGVMIFAATVRHAEEIYRLLPTEH---AALVIGDTPTPERDRIIQAFKQQQI 300
           +IEL+  RQG++IFAATVRHAEEI   L  EH    A+V   TP  ERD +I+ FK +++
Sbjct: 251 LIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDELIERFKAREL 310

Query: 301 KFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQY 360
           KFLVNV+VLTTGFDAPHVDLIAILRPT SVSL+QQ++GRGLR+  GK DCLV+DYA N Y
Sbjct: 311 KFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDCLVIDYAANGY 370

Query: 361 DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDANGFLIEHYGRRCQGYFTDDETG 420
           DLY PEVG  KP+S S  + + CP C F N FWG  D +G +IEH+GRRCQG    +  G
Sbjct: 371 DLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRCQGIV--EHHG 428

Query: 421 EREHCGYRFRAKYCNECGADNDIAARICHECDTTLVDPDKKLKEALNLKDALVFECTDMS 480
           +++ C +RFRAK C +CG +NDIAARIC  C +TL+DPDK+LK+ LN +   +F C  M+
Sbjct: 429 KKQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHHLFRCQHMT 488

Query: 481 LKVHKDAKGKSQLQVTYHGQDAVQVHQFWPLNTPRQKQQFHDQFVRPHLADKH-RPFEAA 539
           L    DA     L+V Y   D  + ++ + L TP Q +  +  F+ PH      +P +  
Sbjct: 489 LM--DDA---GDLKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPKQYK 543

Query: 540 TPAKVVDHQHRFRPPLFVIARKSGRFWTIRDKVF 573
             ++++     F+ P  ++ +K  + W + +  F
Sbjct: 544 QVSELIADSATFKMPDLLLLKKHKKGWDLLESYF 577