Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 987 a.a., helicase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 2e-21
 Identities = 91/359 (25%), Positives = 165/359 (45%), Gaps = 32/359 (8%)

Query: 8   QADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVEQNHA 66
           Q +++ A+     Q  T  ++VL TG GK+ + A +  + A  +VL +AH +E++ Q   
Sbjct: 222 QMEALAALKASREQGFTRGLVVLATGMGKTWLAAFDTLQTAAKKVLFVAHREEILIQAEK 281

Query: 67  KYEGYGLTGAIFSAGLGRKETDQQVVFASVQSV--VRNLSEFQ-NQFSLLVIDECHRVPD 123
            +          S     ++     +FASV ++  +++L  F  + F  +V+DE H    
Sbjct: 282 TFNQLVPEAKTGSYNGLNQDEKTDYLFASVATLGKLQHLQRFAADHFDYIVVDEFHHAAA 341

Query: 124 DKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDCIFE 183
               SY++++ +         +LGLTATP R     I       LV            FE
Sbjct: 342 ---KSYRQLLAYFRP----QFLLGLTATPERSDQADILSLCDNNLV------------FE 382

Query: 184 LPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQ 243
             + + +D   L P         + ++  + P   G++    LD  +   +RAT  ++  
Sbjct: 383 RNLVHGIDGKLLVPFDYHGIYDQAVNYQDI-PWRNGKFDPDALDNALATQRRAT-HVLHH 440

Query: 244 IIELAKARQGVMIFAATVRHAEEIYRLLPTE--HAALVIGDTPTPERDRIIQAFKQQQIK 301
             +  ++R   + F  + +HA+ + +   ++  +A  V  D+    R++ +Q   Q  I+
Sbjct: 441 WQQSKQSR--TLAFCVSKKHADFMAKYFTSKGINAIAVYSDSKV-RRNQALQWLAQGSIE 497

Query: 302 FLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA--AGKSDCLVLDYAGN 358
            + +V +   G D P +D I ++RPTES  L+ Q +GRGLRL+    K   +VLD+ GN
Sbjct: 498 VIFSVDLFNEGTDLPAIDTILMIRPTESKILFLQQLGRGLRLSHQTQKQKLVVLDFIGN 556