Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 982 a.a., helicase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.2 bits (230), Expect = 5e-23
 Identities = 94/354 (26%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 27  VIVLPTGAGKSLVIA-ELARLAR----GRVLVLAHVKELVEQNHAKYEGYGLTGAIFSAG 81
           +IV  TG GK+++ A + AR  +       L +AH +E+++Q    Y G           
Sbjct: 271 LIVAATGTGKTIISAFDFARFYKQHPEANFLFVAHRQEILQQALGAYRGVLKNNQFGELW 330

Query: 82  LGRKETDQ-QVVFASVQSV---VRNLSEFQNQFSLLVIDECHRVPDDKNSSYQKVITHLL 137
           +     +  + +FAS+QS+   + NL    + +  +VIDE H V     SSY+ ++ H  
Sbjct: 331 VAEHTPNSYKHLFASIQSLNLQLDNLPLAADFYDYIVIDEVHHVAA---SSYRGLLEHF- 386

Query: 138 ELNPGMKVLGLTATPYRL-GMGWIYQYHTRGLVRSEEPRFFRDCIFELPIHYLLDEGFLT 196
              P + V GLTATP R  G+  +  +   G++ +E           + +   +++  L 
Sbjct: 387 --EPTILV-GLTATPERHDGVDILADFC--GVIAAE-----------IRLPEAINQRHLC 430

Query: 197 PAQLI----DTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQIIELAKARQ 252
           P Q      +T + + ++S+      GRY  +EL  +   + +   +I+  + E      
Sbjct: 431 PFQYFAIDDETDLRNLNWSR------GRYDVAELSNLYTHNDQRVTRIIRSLAETVTDID 484

Query: 253 GV--MIFAATVRHAEEIYRLLPTEH-AALVIGDTPTPERDRIIQAFKQQQIKFLVNVSVL 309
            +  + F  +  HAE + +       +A V+    + ER    Q+    ++  L  V + 
Sbjct: 485 SIKALAFCVSREHAEYMAKKFNLSGISADVLTSDNSEERHEKRQSLVSGKLSILCVVDIF 544

Query: 310 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQYDLY 363
             G D P VD +  LRPTES++++ Q +GRGLRL   K  C +LD+ GN  D Y
Sbjct: 545 NEGVDIPEVDTLLFLRPTESLTIFLQQLGRGLRLTDDKQCCTILDFVGNSRDEY 598