Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., excinuclease ABC subunit B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 189 LLDEGFLTPAQLIDTPVMSYDFSQLKP------ANTGRYRESELD-LVIEQSQRAT---- 237
           L++ GF  PA + + P+   +F ++        A    Y   + + +V+EQ  R T    
Sbjct: 359 LVEYGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLD 418

Query: 238 ------------PQIVAQIIELAKARQGVMIFAATVRHAEEI--YRLLPTEHAALVIGDT 283
                         ++ +I    +  + V++   T R AEE+  Y L        +  D 
Sbjct: 419 PVIEVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDV 478

Query: 284 PTPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSL-----YQQIVG 338
            T ER +I+   +Q     L+ V++L  G D P V L+AIL   +   L       Q  G
Sbjct: 479 DTLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 538

Query: 339 RGLRLAAGK 347
           R  R   GK
Sbjct: 539 RAARNVNGK 547



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 32 TGAGKSLVIAELARLARGRVLVLAHVKELVEQNHAKYEGYGLTGAI 77
          TG+GK+  IA +        L+L+H K L  Q +++++G+    A+
Sbjct: 39 TGSGKTFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAV 84