Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 61.6 bits (148), Expect = 2e-13
 Identities = 92/428 (21%), Positives = 169/428 (39%), Gaps = 74/428 (17%)

Query: 5   RPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 59
           R YQ +++  V   F      A++V  TG GK+ V   LA+         R+L L   KE
Sbjct: 362 RRYQLETISRVHETFELKRRKALVVQATGTGKTRVSIALAKSLMDAKWVKRILFLCDRKE 421

Query: 60  LVEQ-NHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQ-NQFSLLVIDE 117
           L +Q + A  +  G+   +      + +   +V  A+   ++    +F    F L++ DE
Sbjct: 422 LRKQADKAFVQFLGVKPYVVGKSDKKYKDTARVFIATYPGMMGIYEDFDVGYFDLIIADE 481

Query: 118 CHRVPDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFF 177
            HR       S   V  +L +    ++V GLTATP  +         T  L   +    +
Sbjct: 482 SHR-------SIYNVFGNLFKYFDCLQV-GLTATPVEM-----VSRSTCNLFDCD----Y 524

Query: 178 RDCIFELPIHYLLDEGFLTPAQLI-----------------DTPVMSYDFSQLKPANTGR 220
           ++     P+   + EG L P +++                 D  +   + +Q +  N   
Sbjct: 525 KEPTANYPLEKAIGEGHLVPFEIVTMTTKFMREGMNQRSLSDEQIAELE-AQGEDPNEFE 583

Query: 221 YRESELDLVIEQSQRATPQIVAQIIELA---KARQGV---MIFAATVRHAEEIYRLLPTE 274
           +  +E+D  +  ++    +I+  ++E     K  Q +   +IFA  + HA  +  L    
Sbjct: 584 FESAEIDNAV-LNKDTNRKILRNLMENGIKDKDNQLIGKSIIFARKINHARLLKELFDEM 642

Query: 275 HAALVIG-----DTPTPERDRIIQAFK------------QQQIKFLVNVSVLTTGFDAPH 317
           +  L  G      +  P  + +I  FK               I   ++V +L TG D P 
Sbjct: 643 YPELSQGFCEVIHSEEPRAEALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVPS 702

Query: 318 VDLIAILRPTESVSLYQQIVGRGLRLAAG-------KSDCLVLDYAGNQYDLYQPEVGDP 370
           V  +   +P +S   + Q++GRG RL          K+  L+ D+  N +D ++    + 
Sbjct: 703 VVNLVFAKPVKSKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFDH-WNNFDYFEFNYEEV 761

Query: 371 KPDSDSEI 378
           +P +   +
Sbjct: 762 EPSNTKSL 769