Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  175 bits (444), Expect = 6e-49
 Identities = 101/231 (43%), Positives = 133/231 (57%), Gaps = 3/231 (1%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHG-- 58
           MR+D+FL +     R++   LL    V +D  +      +++E S VE  G ++   G  
Sbjct: 1   MRVDRFLSNLPRFNRQQVRLLLVERRVRIDGQIVSDPHAQVREFSRVE-VGDDVLQAGRP 59

Query: 59  PRYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSH 118
            RY M+HKP G V +  D  + T L  LDE +  DLH AGRLD +TTGL+LIT+DG WS 
Sbjct: 60  ARYFMLHKPPGCVSATRDPQHPTVLDWLDEPDKDDLHIAGRLDFNTTGLMLITNDGSWSR 119

Query: 119 RVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIH 178
           R+T P+ K  K Y V     I A+YA  F  G+    E   T PA+L ++      L+I 
Sbjct: 120 RLTQPQTKLPKVYYVETEQTITAEYATTFAHGLYFAFEDLTTQPAELTLLGPKSARLSIV 179

Query: 179 EGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           EG+YHQVKRMF    NKV+ LHRER+G + LD  LEPG YR LT EE+  I
Sbjct: 180 EGRYHQVKRMFGHFDNKVLRLHRERMGPLLLDANLEPGHYRALTPEEIRLI 230