Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

 Score =  187 bits (476), Expect = 1e-52
 Identities = 98/230 (42%), Positives = 142/230 (61%), Gaps = 1/230 (0%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITL-HGP 59
           MRLD++L +    +R++  +L+  G V V+  V ++   +++    +E +G  +      
Sbjct: 1   MRLDRYLGNRARLSRQDVRRLVADGRVMVNGKVSQAMDQEIRVFDRIELEGESLQAGKAA 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           RY+M+HKP G V + +D  ++T L L+DE + QDLH AGRLD +TTGL+L+T+DGQWS R
Sbjct: 61  RYLMLHKPAGCVSATQDTAHRTVLDLIDEPDKQDLHIAGRLDFNTTGLMLLTNDGQWSRR 120

Query: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179
           +T P     K Y V   + I     + F RG+  R E   TLPA+L +++  +  LT+HE
Sbjct: 121 LTQPTSLQGKVYLVETENEIDPACVDVFARGMYFRFENLTTLPAELVILASDKARLTLHE 180

Query: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           G+YHQVKRMF    NKV  LHRE +G + LD  LEPG YR LT+ E+A I
Sbjct: 181 GRYHQVKRMFGHFNNKVTALHRESMGPLMLDPALEPGRYRSLTDHEIAQI 230