Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score = 90.9 bits (224), Expect = 2e-23
 Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 12/235 (5%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKE-TSCVEWQG---REITLH 57
           RL+K + +    +R+EA +L+    VTV+ V+  +GA   ++ T  V+ Q    RE    
Sbjct: 41  RLNKHIAETGFCSRREADRLIGERRVTVNGVIAGTGAVVGEDDTVLVDGQPLRVREAKKP 100

Query: 58  GPR---YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDG 114
           G R   YI ++KP G+  + E       +  +     Q +   GRLD D+ GL+L+T +G
Sbjct: 101 GTRRHVYIALNKPVGITSTTESSVKGNIVEFVGHE--QRIFPIGRLDKDSEGLILMTSNG 158

Query: 115 QWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVL 174
              + +   +++ +K Y V +  P+  ++     RG+ L    E TLP +   I++    
Sbjct: 159 NIVNEILRAENRHQKEYLVAVNKPVTDEFLRGMARGVRLHD--ETTLPCRTARIAKFGFR 216

Query: 175 LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           + + +G   Q++ M AA G +V  L R RI  I L   L+PG++R LT++E+  +
Sbjct: 217 IVLEQGLNRQIRLMAAAFGFRVTQLRRVRIDNIKL-AALKPGQWRNLTDQELQGL 270