Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., ribosomal large subunit pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score =  122 bits (305), Expect = 8e-33
 Identities = 80/233 (34%), Positives = 130/233 (55%), Gaps = 11/233 (4%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREIT-LHGP- 59
           RL K L      +R++A Q ++ G VT++  V + G     +   +   G+ +   H P 
Sbjct: 4   RLQKILSQLGVASRRQAEQWIQQGRVTINGRVAEIGQQADLKRDRIHLDGKRLRPKHRPE 63

Query: 60  -RYIMMHKPDGVVCSHEDGFNQ-TALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWS 117
            RY+++HKP GVV +  D   + T + L+D      LH  GRLD D++GLLL+ +DG+ +
Sbjct: 64  ARYLLLHKPVGVVSTCRDPQRRRTVIDLVDPEFRPGLHPVGRLDTDSSGLLLLCNDGELT 123

Query: 118 HRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISE----TEV 173
           ++++ P+   EKTYRVW+     A   E +  G+ L  +   TLPA + ++ +    T +
Sbjct: 124 YQISHPRFHIEKTYRVWVEGHPPASVLEHWRSGVWL--DDYQTLPAGVRILHDRAESTLL 181

Query: 174 LLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226
            + +HEG+  Q++R+   LG+ V+ L R  IG + L  +L+PGEYR LT  EV
Sbjct: 182 EVILHEGRNRQIRRVAEQLGHPVLRLTRVAIGPLRLG-SLQPGEYRSLTAAEV 233