Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 82.4 bits (202), Expect = 7e-21
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 19/240 (7%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREIT-LHGPR 60
           RL K+L +A   +R+ A++L+++G V +D   Q S + ++ +++ V   G  +       
Sbjct: 11  RLCKYLAEAGVASRRGASRLIETGRVCIDGQ-QASHSDRVFDSNRVTVDGAPLCPAQAKA 69

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHF--AGRLDVDTTGLLLITDDGQWSH 118
           Y + HKP G+ C        + +  L      DL    AGRLD D+ GLLL+T+DG+ + 
Sbjct: 70  YFLYHKPVGIDCRLRAEDPHSLIHCLPG----DLRLFPAGRLDKDSRGLLLLTNDGELTQ 125

Query: 119 RVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGE---RELTLPAQLEVISETE--- 172
           R+  P    +K Y + L    Q D       G +  GE   R   + A ++    TE   
Sbjct: 126 RLMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDY-GEGPTRPCVVEAAIDCGYATEDGN 184

Query: 173 ---VLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
              + + + EGK  Q++R++ A G +V+ L RE I Q+ + + LE GE R LT  E+  +
Sbjct: 185 PRKLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGK-LEQGEIRSLTASELRQL 243