Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  167 bits (422), Expect = 2e-46
 Identities = 90/224 (40%), Positives = 127/224 (56%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPRY 61
           RLD FL   L   +K   +LLK+  VTVD  V    A ++   S +      +    PRY
Sbjct: 7   RLDSFLAKTLNIPKKAVRELLKAERVTVDGKVALEMALQIGPFSQIYLGDTALRADTPRY 66

Query: 62  IMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRVT 121
           +M++KP GVV + +D  ++T L L+ E     LH  GRLD++T+GL+L+++D +WS  + 
Sbjct: 67  LMLNKPVGVVSATKDKEHKTVLDLIPEALRAGLHIVGRLDLNTSGLVLLSNDSRWSESMM 126

Query: 122 SPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEGK 181
            P     K Y V L  P+  DY   F RG     E   TLPA+L ++ E E  + + EGK
Sbjct: 127 QPGAHVPKEYWVTLEHPLTEDYIAAFERGFYFETEGITTLPARLAILGEREARVELCEGK 186

Query: 182 YHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEE 225
           YHQ+KRMF    N V+ LHR RIG + LD  L PG++R LT++E
Sbjct: 187 YHQIKRMFGRFQNPVVALHRHRIGALMLDPGLAPGQWRPLTDDE 230