Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  253 bits (646), Expect = 2e-72
 Identities = 127/229 (55%), Positives = 162/229 (70%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60
           MRLDK+L +    +R  A + + SG+V+ D VV K  AFK+ + + V +QG  + L G R
Sbjct: 1   MRLDKYLAETTALSRGLAKKAINSGDVSCDGVVMKDPAFKVPQGARVCFQGEVLALVGVR 60

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRV 120
           Y+M+HKP   +CS +D +  + L+LLD      LH AGRLD DTTGL+LITDDG WSH+V
Sbjct: 61  YLMLHKPVDTICSTQDEYYPSVLSLLDIARPDKLHIAGRLDADTTGLVLITDDGLWSHKV 120

Query: 121 TSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEG 180
           TSPK  C K YRV LA+ +  D   QF  G++L GE  LT PA+LE++S+TE LL+I EG
Sbjct: 121 TSPKRDCAKRYRVQLAESLTDDLIAQFAEGVQLNGEDGLTKPAKLELLSDTEALLSITEG 180

Query: 181 KYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           KYHQVKRMFAA+GNKVIGLHRE +G I LD  L PGE+RYLTE E+AS+
Sbjct: 181 KYHQVKRMFAAVGNKVIGLHREAVGAIELDPQLAPGEWRYLTEAEIASV 229