Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase from Pseudomonas sp. BP01

 Score =  177 bits (448), Expect = 2e-49
 Identities = 98/230 (42%), Positives = 133/230 (57%), Gaps = 1/230 (0%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP- 59
           MRLD+FL +     R++   +L    V VD  V      +++E S VE   + +    P 
Sbjct: 1   MRLDRFLANLPSHNRQQVRLMLAQRRVRVDGQVVSDPLAEVREFSRVELDDQLLQAGRPA 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           RY+M++KP G V + +D  + T L LL      DLH AGRLD +TTGL+++T+DGQWS R
Sbjct: 61  RYLMLYKPQGCVSATQDPQHPTVLDLLPTALRDDLHIAGRLDFNTTGLMILTNDGQWSRR 120

Query: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179
           +T P  K  K Y V   D I   Y  +F  G     E   T PAQL+++   +  L I E
Sbjct: 121 LTQPATKLPKHYLVETEDEIGEHYVARFREGFYFAFEDLTTQPAQLDILGPRQARLAIVE 180

Query: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           G+YHQVKRMF    NKV+GLHRE +G I LD +L PGE+R LT  E+A++
Sbjct: 181 GRYHQVKRMFGFFDNKVVGLHRESMGAIRLDTSLAPGEFRDLTAAEIATV 230