Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., ribosomal large subunit pseudouridine synthase E from Phaeobacter inhibens DSM 17395

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 24/183 (13%)

Query: 60  RYIMMHKPDGVVCSHEDGFNQTA--LTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWS 117
           R I  +KP  V+    D  + ++   TL D +++  ++ AGRLD D+ GL+L+TD G+  
Sbjct: 3   RLIRFNKPYDVLPQFTDRGSDSSPRATLSDWIDLPGVYPAGRLDRDSEGLMLLTDHGRLQ 62

Query: 118 HRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETE----- 172
             ++ P+HK  KTY V +     A   +    G+EL+    +T PA+  +I E E     
Sbjct: 63  AWISDPQHKMPKTYWVQVEGTPDAAAIQALANGVELKD--GMTRPAKAALIEEPEGIWAR 120

Query: 173 --------------VLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEY 218
                         + LTI EG+  QV+RM AA+G+  + L R  IG  TLD  L PG +
Sbjct: 121 NPPIRVRKSVPDSWIALTIREGRNRQVRRMTAAVGHPTLRLIRAAIGIWTLD-GLSPGTW 179

Query: 219 RYL 221
             L
Sbjct: 180 EDL 182