Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 86.3 bits (212), Expect = 5e-22
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 14/239 (5%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQK-SGAFKLKETSCVEWQGREITLHGP 59
           MRL ++L      +R+ A++L+++G V++ D + K + + +L ET         + + G 
Sbjct: 1   MRLAQYLALTGRCSRRAASRLIRNGRVSLGDRLAKHTDSIELIETPTGTQASLSVCVDGE 60

Query: 60  --------RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLIT 111
                    Y + +K  G  C        + + LL       L+  GRLD D+ GLLL+T
Sbjct: 61  PLPPIADKAYWIFNKAVGTDCRLLAEDTTSLIHLLPRQ--PRLYPVGRLDKDSRGLLLLT 118

Query: 112 DDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISET 171
           +DG+ + R+  P     K Y V L  P   D+  +   G+  +     T P Q+  + + 
Sbjct: 119 NDGELTQRLMHPSFAHHKRYHVRLDRPFDDDFVVKMAAGVSYKD--VTTQPCQVTRLGQD 176

Query: 172 EVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASIW 230
              + + +G   Q++RM   LG+KVI L R  I  +TL + L  GE R LT+ E+  +W
Sbjct: 177 SFEIVLTQGLNRQIRRMSKTLGHKVIDLKRVAIESLTLGD-LPEGEMRPLTQAELDELW 234