Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  268 bits (685), Expect = 7e-77
 Identities = 136/229 (59%), Positives = 166/229 (72%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60
           MRLDKF+ ++   TR  A + L  GEVTVD  V K G+FKL E+  V   G  I+L GPR
Sbjct: 1   MRLDKFISESTQLTRSLAKKALHRGEVTVDGQVIKDGSFKLNESQQVCLDGEPISLIGPR 60

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRV 120
           +IM+HKP   +CS  D    + L LLD  + +DLH AGRLD DTTGL+LIT DGQWSHRV
Sbjct: 61  FIMLHKPADTLCSTVDEVYPSVLNLLDLPHKEDLHIAGRLDADTTGLVLITSDGQWSHRV 120

Query: 121 TSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEG 180
           TSPK +C KTY V LADP++A++ EQF  G+ LR E  LT PA LE++   E  LTI EG
Sbjct: 121 TSPKRECGKTYLVQLADPLKAEWVEQFATGLALRSEEGLTKPATLELLGSHEARLTITEG 180

Query: 181 KYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           KYHQVKRMFAA+GNKV+GLHRE +G+I LDE+L PGE+RYLTE E+AS+
Sbjct: 181 KYHQVKRMFAAVGNKVVGLHRESVGEIVLDESLAPGEWRYLTEAEIASV 229