Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score = 95.9 bits (237), Expect = 7e-25
 Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 28/220 (12%)

Query: 23  KSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPRYIMMHKPDGVVCSHEDGFNQTA 82
           + G  T  + V+     K K  S  + + R      P  ++ +KP  V+C   D   Q  
Sbjct: 53  RGGGATAAEGVKHKPKLKAKPRSKPKPKPRP---QNPIIVLFNKPFDVLCQFTD--EQGR 107

Query: 83  LTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQAD 142
            TL D + IQD++ AGRLD D+ GLLL+T+DGQ   R+T PK K +KTY V + + I +D
Sbjct: 108 QTLKDFIPIQDVYAAGRLDRDSEGLLLLTNDGQLQSRITEPKKKTDKTYWVQV-EGIPSD 166

Query: 143 YAEQFNR-GIELRGERELTLPAQLEVISETEV------------------LLTIHEGKYH 183
            A Q  R G+ L+     TLPA++E I+E +V                   +TI EG+  
Sbjct: 167 EAIQALRDGVTLKDGP--TLPAKVERIAEPDVWPRNPPVRERKQIPTSWLAITICEGRNR 224

Query: 184 QVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTE 223
           QV+RM A +G   + L R +IGQ +L+     GEY+ L +
Sbjct: 225 QVRRMTAHVGYPTLRLIRYKIGQWSLNGVAN-GEYKVLPQ 263