Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (467), Expect = 1e-51
 Identities = 95/229 (41%), Positives = 138/229 (60%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPRY 61
           RLD+F+       RK+   +L  G V+VD  V +    ++ + S V   G+ +    P Y
Sbjct: 7   RLDRFISQHCQIPRKQVRLILAKGRVSVDGQVVRDADCQIDQFSQVMLDGQALRQEQPIY 66

Query: 62  IMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRVT 121
           +M+HKP GVV + +D  ++T + LL +   + LH  GRLD++T+GLLL+T+D +WS R+ 
Sbjct: 67  LMLHKPVGVVSATKDDEHKTVMDLLPDYQDKGLHIVGRLDLNTSGLLLLTNDSRWSKRIM 126

Query: 122 SPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEGK 181
           SP+HK  K Y V L  P+   Y + F  G     E   T PAQLE++      +T+HEG+
Sbjct: 127 SPEHKVAKQYLVTLKAPLTQAYVKAFAEGFYFAFENITTQPAQLEILEPHLARVTLHEGR 186

Query: 182 YHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASIW 230
           YHQ+KRMF    N+V+ LHR  +G + LDETL  G+YR LT +EVASI+
Sbjct: 187 YHQIKRMFGRFRNQVMALHRLSVGNLILDETLAVGQYRPLTPQEVASIF 235