Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., pseudouridine synthase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 90.1 bits (222), Expect = 4e-23
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 13/240 (5%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVD-DVVQKSGAFKLKETSCVEWQGREITLHGP 59
           +RL+K +  A   +R++A  L++ G V V+ +VV   GA  +     +E +G+ + L   
Sbjct: 6   VRLNKAIAGAGVCSRRQADDLIQQGVVRVNGEVVDTPGARVVPGRDRIEVRGQLLELDAA 65

Query: 60  ----RYIMMHKPDGVVCSHEDGFNQ-TALTLLD-EVNIQDLHFAGRLDVDTTGLLLITDD 113
                Y+M+HKP  VV +  D   + T L +L  ++    L+  GRLD  + GLL++TDD
Sbjct: 66  PAAFTYVMLHKPVQVVSTVRDPQGRPTVLGILPPDLRGGRLYPVGRLDYFSEGLLILTDD 125

Query: 114 GQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEV 173
           G  ++R+T P++   K Y V +   +         +G+ L  E E   P  + ++     
Sbjct: 126 GDLTNRLTHPRYHLPKVYMVKVRGHVTESTLAPMRQGMTL-AEGEKLAPVDVRLLQSDRQ 184

Query: 174 L----LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
                +T+H+G   Q++RM   LG  V+ L R R G + L E L  G  R LT  EVA++
Sbjct: 185 ASLFEMTLHQGVNRQIRRMCRDLGLTVLLLRRVRQGPLELGE-LPKGAARRLTPHEVAAL 243