Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., ribosomal small subunit pseudouridine synthase A from Caulobacter crescentus NA1000

 Score =  156 bits (394), Expect = 4e-43
 Identities = 93/228 (40%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQ----GREITLH 57
           RLD+ L +    +RKE   L+  G+V +D  + K    ++   + +  +    G  +   
Sbjct: 8   RLDRLLANLGYGSRKEVQALVAGGKVVLDGAILKDAGARIAVDATLPERMTIRGAPVDPP 67

Query: 58  GPRYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQD--LHFAGRLDVDTTGLLLITDDGQ 115
            P  ++MHKP GVVCSH++   +    L     ++D  L   GRLD DT+GL+LITDDG 
Sbjct: 68  APLVLIMHKPLGVVCSHKEDGEKIYDLLPRRWRLRDPGLSTVGRLDKDTSGLILITDDGD 127

Query: 116 WSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRG-IELRGERELTLPAQLEVISETEVL 174
           + HRV SPK    KTY   L  P+     E F  G + L  E +  LPA+L+V++     
Sbjct: 128 FLHRVISPKRHVPKTYLATLDRPLNGSEGEVFAAGTLMLDSEEKPLLPARLDVVNAHAAR 187

Query: 175 LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLT 222
           LTI EG+YHQV+RMFAA+GN V+ LHRERIG I L + L  G++R LT
Sbjct: 188 LTITEGRYHQVRRMFAAVGNHVVALHRERIGGIALPDDLAAGQHRILT 235