Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., ribosomal large subunit pseudouridine synthase F from Caulobacter crescentus NA1000

 Score =  103 bits (256), Expect = 4e-27
 Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 17/242 (7%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREIT-LHGPR 60
           R++K+L  +   +R+EA QL+  G V++D  V +    K++    +    R    L    
Sbjct: 14  RVNKWLAQSGVCSRREAEQLISDGLVSIDGEVVEDVGRKIQPGQTLTLADRATAKLDAVP 73

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQD-------------LHFAGRLDVDTTGL 107
             ++HKP GVV S  D     A  LL   N+               +   GRLD D+ GL
Sbjct: 74  TYLVHKPRGVVSSQPDPGQVPAARLLTRANLWGDARGVAIPQSGDLIPPIGRLDKDSRGL 133

Query: 108 LLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEV 167
           LL++ DG  +  V  P+ + EK YRV +   +  +  E    G+EL G REL  PA++EV
Sbjct: 134 LLLSQDGVVAKAVIGPQSELEKEYRVAVMGELTEEKLELLRFGLELDG-RELR-PAEVEV 191

Query: 168 ISETEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVA 227
           IS+  +   + EG+  Q++RM   +  KV+ L R R+G + L +  E G +R LT  E A
Sbjct: 192 ISDQRLSFVLREGRNRQIRRMCELVDLKVVDLFRVRVGPLDLGDMPE-GHWRLLTAAERA 250

Query: 228 SI 229
           ++
Sbjct: 251 AL 252