Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella sp. ANA-3

 Score =  184 bits (467), Expect = 1e-51
 Identities = 97/229 (42%), Positives = 144/229 (62%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPRY 61
           RLD++L   L   RK   +LL +  V VD +  K+    + E S + + G+ +  + P Y
Sbjct: 7   RLDRYLAVKLQIHRKAVRELLLTERVYVDGIPAKALDLLVDEFSHIVFDGQVLQANKPVY 66

Query: 62  IMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRVT 121
           +M+HKP GVV + +D  ++T + LLD     +LH AGRLD++++GLLL+T+D +WS  + 
Sbjct: 67  LMLHKPVGVVSATKDTEHRTVIDLLDCDARHELHIAGRLDLNSSGLLLLTNDSRWSEALM 126

Query: 122 SPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEGK 181
           SP  K +K YRV LA+P+  +Y   F +G+    E   T PA+L ++      +T+ EGK
Sbjct: 127 SPDQKVDKVYRVTLANPLSEEYIAAFAQGMYFGFEDITTQPAKLTILDTHIAEVTLREGK 186

Query: 182 YHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASIW 230
           YHQ+KRMF    N V+GLHR  IG+ITLD+ L+PGE R LT +EVAS++
Sbjct: 187 YHQIKRMFGRFRNPVVGLHRHSIGEITLDDGLKPGESRMLTAQEVASVY 235