Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., ribosomal large subunit pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score = 79.3 bits (194), Expect = 7e-20
 Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 19/238 (7%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP-- 59
           +L K L  A   +R+E    + +G V++D V+   G  +++  + V   GR ++L     
Sbjct: 4   KLQKVLARAGHGSRREMEAWIAAGRVSIDGVIANLGD-RIEADAKVRIDGRAVSLKSADD 62

Query: 60  ---RYIMMHKPDGVVCSHEDGFNQ-TALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQ 115
              R +  HKP+G +CS +D   + T    L +V        GRLD++T+GLLL T DG+
Sbjct: 63  VICRVLAYHKPEGEICSRKDPEGRPTVFDRLPKVRDSRWVAVGRLDINTSGLLLFTSDGE 122

Query: 116 WSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISET--EV 173
            ++R+  P ++ E+ Y V     +     ++   G+ L         AQ + I     E 
Sbjct: 123 LANRLMHPSNEVEREYAVRTFGEVPEAAVQRLRTGVMLEDGM-----AQFDAIKAAGGEG 177

Query: 174 L-----LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226
           +     + + EG+  +V+R++ +   +V  L R R G + L ++L  G +  L  E+V
Sbjct: 178 MNQWWHVCLREGRNREVRRLWESQEVQVSRLIRVRYGMVELPKSLPRGGWVELPIEQV 235