Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella sp. ANA-3

 Score = 95.9 bits (237), Expect = 6e-25
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 19/239 (7%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVD-------DVVQKSGAFKLKETSCVEWQGRE 53
           MRL K+L     ++R+EA +L+++G ++++       D V      +  ++ C++    E
Sbjct: 1   MRLAKYLAQCGISSRREACRLIEAGRISLNGKIAKHTDAVHFDADGQCLDSLCLD----E 56

Query: 54  ITLHGPR---YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLI 110
             + G     Y + +K  G  C   D    + L LL       L+  GRLD D+ GLLL+
Sbjct: 57  KPISGAEALSYWIFNKAVGTDCRLLDADKSSLLHLLPTT--PRLYPVGRLDKDSRGLLLL 114

Query: 111 TDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISE 170
           T+DG+ +H++  P     KTY V L  P    +  Q   G++ +  R  TLP Q+  +S 
Sbjct: 115 TNDGELTHKLMHPSFAHSKTYHVQLDRPFNDAFIAQMASGVQYKEVR--TLPCQVTRLSA 172

Query: 171 TEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
               + + +G   Q++RM  ALG KVI L R  +  +TL  +L  GE R L+ EE+ ++
Sbjct: 173 DRFEIVLTQGLNRQIRRMSNALGYKVIDLQRVALMTLTL-ASLAEGEMRPLSPEEITTL 230