Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., ribosomal small subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  231 bits (590), Expect = 7e-66
 Identities = 123/229 (53%), Positives = 151/229 (65%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60
           +RLDKF+C++   TR  A + L  G++T D  V K   FK+ E   V  +G  I+L G R
Sbjct: 7   VRLDKFICESTSLTRSLAKKALHRGDITCDGAVIKDAGFKVLEGMQVCLEGEFISLVGER 66

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRV 120
           Y+M++KP   +CS  D    + L+LLD    + LH AGRLD DTTGL+LIT DGQWSHR+
Sbjct: 67  YLMLNKPVDTICSTIDEVYPSVLSLLDIEKPETLHIAGRLDADTTGLVLITSDGQWSHRI 126

Query: 121 TSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEG 180
           TSPK  C K Y V LA+P+       F  G+ELR E  LT PA LE+I    V LTI EG
Sbjct: 127 TSPKKDCGKRYLVTLAEPVDESLIGVFAAGVELRNEDCLTKPALLEIIEPQLVRLTITEG 186

Query: 181 KYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           KYHQVKRMFAA+GN V+GLHRE IG+I LD  L  GE+RYLT EE+ASI
Sbjct: 187 KYHQVKRMFAAVGNHVVGLHRESIGKIELDAELALGEWRYLTSEEIASI 235