Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., MFS transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  240 bits (612), Expect = 6e-68
 Identities = 142/378 (37%), Positives = 212/378 (56%), Gaps = 4/378 (1%)

Query: 14  MSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHG 73
           M+L   ++LGAL A  PLAID YLPA P +A  FG +   VQ+TL AY  G +IGQL +G
Sbjct: 1   MNLRTILILGALSAFGPLAIDFYLPAFPAMAAAFGTDEKHVQLTLAAYFLGLSIGQLAYG 60

Query: 74  PLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDM 133
           P+AD FGRR  +L G+ LF +A++V A    +E L   R  Q   G A  V+ +AVV D 
Sbjct: 61  PVADRFGRRMPLLVGVGLFTLASLVCAFAPSLEWLIAARFLQALGGCAGMVISRAVVSDK 120

Query: 134 FDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIP 193
            D    A+  S + LV+ LAP++APM+GG L   +GW+SIF  L +F+AL    V   +P
Sbjct: 121 CDAVGSAKVFSQLMLVMGLAPILAPMLGGLLVNLYGWQSIFIALTVFSALSALAVAVGLP 180

Query: 194 ETL-SPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYG 252
           E+L + + RQPL     +R Y  L  + + +G   +G  + AGMFA++    FV+I +YG
Sbjct: 181 ESLPANQPRQPL--SGALRQYGRLLSDRIFLGHALTGGIAIAGMFAYIAGSPFVFIKLYG 238

Query: 253 VSPDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLF-VSWVLDW 311
           V  + FG+LFG N    I +  +N R + K G   +L   +++ L AG+ L  VS +   
Sbjct: 239 VPAEHFGWLFGTNAAGFILVAQVNARLLSKRGPAFLLARTVWIYLAAGLSLLAVSSLHTE 298

Query: 312 GLWGTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSIIGAVVAAL 371
            LW  +  + + + ++  I  N+    +S     AG+AS++ G L+F   +   A+V  L
Sbjct: 299 HLWPLLIPLFICIASLGCIIPNASACAMSGQGARAGSASAMLGCLQFSVAAGAAALVGVL 358

Query: 372 PGTETWPMIFVMAACSVL 389
                 PM  V++ C++L
Sbjct: 359 HDGTAMPMAMVISLCAIL 376



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 1   MSASTVNTQQTPQMSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTA 60
           ++ S+++T+    + + L+I + +LG + P A    +      A       G +Q ++ A
Sbjct: 290 LAVSSLHTEHLWPLLIPLFICIASLGCIIPNASACAMSGQGARAGSASAMLGCLQFSVAA 349

Query: 61  YTAGFAIGQLLHGPLADSFGRRPVMLCGIFLFGIAAM 97
             A  A+  +LH   A       + LC I +  +A +
Sbjct: 350 GAA--ALVGVLHDGTAMPMA-MVISLCAILVVSVAML 383