Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (341), Expect = 2e-36
 Identities = 97/322 (30%), Positives = 155/322 (48%), Gaps = 35/322 (10%)

Query: 6   VNTQQTPQMSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGF 65
           ++   T + SL+ +  L  L  L  LA DMYLPA   I      +A  V +TLT +  G 
Sbjct: 2   ISNSLTKRRSLVFFPYLALLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGL 61

Query: 66  AIGQLLHGPLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVV 125
           AIGQL +G L D FG+R  ++ G+ +F +++++   T  I     +R  Q F   +AAV+
Sbjct: 62  AIGQLAYGSLCDKFGKRNTLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAVI 121

Query: 126 IQAVVRDMFDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVI 185
            QA+V + FD  +  +  S +  +V L+P +AP++G  ++  FGWR+IF +LA+   L+ 
Sbjct: 122 WQALVMEKFDEGEARKVFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFIILAIVGLLLA 181

Query: 186 AMVMWKIPETLSPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAF 245
           AM      E+ +    +P+  ++ ++N     +N VA             +F   +A  F
Sbjct: 182 AMTPALAKESRTRSQSEPILVKNILKN--RAFQNNVA-------------IFGACSAAFF 226

Query: 246 VYIDIYGVSPDGFGYL---FGLNIVAMIALTTINGRFVKK-IGSHN-------------M 288
            Y+ ++       GY     GL+ +       + G   KK + SH+             +
Sbjct: 227 CYLTLWPAVMQHHGYAAAEIGLSFIPQTLAFMLGGFACKKALHSHSPEAIKNMLITGFVV 286

Query: 289 LRFALFL--QLMAGIGLFVSWV 308
           L   LFL  QL AGI L V WV
Sbjct: 287 LSLVLFLLTQLGAGI-LAVLWV 307