Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (322), Expect = 3e-34
 Identities = 104/359 (28%), Positives = 174/359 (48%), Gaps = 24/359 (6%)

Query: 17  LLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLA 76
           LLY+ L  L  L  +A DMYLPA   I      +   V ++LT + AG A+GQL++GPL 
Sbjct: 17  LLYLAL--LSMLGFIATDMYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLV 74

Query: 77  DSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDR 136
              G+R  +L G+ +F ++++  A ++ +  L   R  Q     +A V+ QA+V + +D 
Sbjct: 75  SKLGKRYALLIGLAVFALSSVAIANSDSVMMLNIARFFQAIGACSAGVIWQAIVVEQYDA 134

Query: 137 EDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETL 196
           E      S +  +V L+P +AP++G ++   FGWR+IF  L + A L++ M ++ +P   
Sbjct: 135 EKAQGIFSNIMPLVALSPALAPILGAYILNEFGWRAIFISLCVIAFLLVLMTLYFVPGKS 194

Query: 197 SPENRQPLRFRSTMRNYFDLCKNPVAMG-LIFSGAFSFAGMFAFLTAGAFVYIDIYGVSP 255
             ++ +P     +  +Y  + KN   +G ++  GA S A  FA+LT    V ++ +G   
Sbjct: 195 KHQDIKP-----SAVSYGQILKNTRYLGNVVIFGACSGA-FFAYLTVWPIV-MEQHGYQA 247

Query: 256 DGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVLDWGLWG 315
              G  F    +  I     +   +K+IG+   L   L +    GI   VS VL   L+ 
Sbjct: 248 TEIGLSFIPQTIMFIVGGYASKLLIKRIGADKTLNVLLSI---FGI-CVVSIVLFTLLFK 303

Query: 316 TVPFVVLFV---------GTISTIGSNSMGLLLSKY-PRMAGTASSLAGTLRFGTGSII 364
           T+    L +         G I  I  NS     +++  + AG  + L  T+ FG  S++
Sbjct: 304 TITIFPLLISFSILAAANGAIYPIVVNSALQQFTQHASKAAGLQNFLQITIAFGASSLV 362