Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., bicyclomycin resistance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  208 bits (529), Expect = 3e-58
 Identities = 125/382 (32%), Positives = 207/382 (54%), Gaps = 7/382 (1%)

Query: 12  PQMSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLL 71
           P ++LL+ + L A+ A+TPLAIDMYLPAM T+A  F  +   VQ +L+ Y  G+A+G L 
Sbjct: 16  PHLALLIPM-LAAIVAITPLAIDMYLPAMATLAHSFNTDIILVQQSLSVYLGGYALGMLC 74

Query: 72  HGPLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVR 131
            GPLAD  GRRP+++ G+  F + + +      I     +R  Q F GAAA VV+   ++
Sbjct: 75  FGPLADRLGRRPMVIMGLTGFMLISFLLGLAEQINVFLGLRFLQAFIGAAATVVVPGYIK 134

Query: 132 DMFDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMV--M 189
           +++  E+ A+ MS+V+L++ LAPL+AP IG  +     W  IF++ + +  L++ +V  +
Sbjct: 135 EVYG-ENTAKGMSYVSLIMMLAPLLAPTIGSLILELGDWHLIFFIQSAYTLLLLLLVIIL 193

Query: 190 WKIPETLSPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYID 249
            ++P      +R     +S +  Y  +   P     I SG  +    F +LTA  FVY++
Sbjct: 194 LRMPSDKDKSSRSQ---KSFLGAYATVFSRPGVKMNIASGVLTSFAFFCYLTASPFVYME 250

Query: 250 IYGVSPDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVL 309
           ++ +    F  LF  N+ A++    IN R V + GS  ML  + FL  +A  GL    +L
Sbjct: 251 VFSLDKSLFALLFSTNVGALMLANIINTRIVGRYGSLRMLHVSTFLGALAAAGLLGVNLL 310

Query: 310 DWGLWGTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSIIGAVVA 369
                 TV  ++  +G++  +  N+  ++L K+ +  GTA+++ GTLRFG G++ G ++A
Sbjct: 311 GLSYHFTVLMLIPLMGSLGIMSVNADAIVLMKFKQETGTATAVIGTLRFGFGALAGPLLA 370

Query: 370 ALPGTETWPMIFVMAACSVLSG 391
                   P   +M    +L G
Sbjct: 371 LFYNGTAVPFSALMLTAVLLVG 392