Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella sp. ANA-3

 Score =  128 bits (322), Expect = 3e-34
 Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 18/356 (5%)

Query: 17  LLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLA 76
           L Y+ L  L  L  +A DMYLPA   I   F      V ++LT + AG A+GQL++GPL 
Sbjct: 17  LFYLAL--LSMLGFIATDMYLPAFKAIESSFNSTPSQVAMSLTCFLAGLALGQLIYGPLV 74

Query: 77  DSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDR 136
              G+R  ++ G+ +F +A++  A ++ I  L   R  Q     +A V+ QA+V + +D 
Sbjct: 75  SKLGKRYALILGLGIFALASVAIANSDSILMLNIARFFQAVGACSAGVIWQAIVVEQYDA 134

Query: 137 EDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETL 196
           E      S +  +V L+P +AP++G ++   FGWR+IF  L + A L++ M ++ +P   
Sbjct: 135 EKAQGIFSNIMPLVALSPALAPILGAYILNDFGWRAIFISLCVIAFLLVLMTLYFVPSHA 194

Query: 197 SPENRQPLRFRSTMRNYFDLCKNPVAMG-LIFSGAFSFAGMFAFLTAGAFVYIDIYGVSP 255
             ++ +P     +  +Y  + KN   +G ++  GA S A  FA+LT    V ++ +G   
Sbjct: 195 EHQDTRP-----SAVSYGQILKNTRYLGNVVIFGACSGA-FFAYLTVWPIV-MEQHGYQA 247

Query: 256 DGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVLDWGLWG 315
              G  F    +  I     +   +K+IG+   L   L +  +  I + V + L      
Sbjct: 248 TEIGLSFIPQTIMFIVGGYASKLLIKRIGADRTLNVLLAIFGLCVISI-VFFTLLMKAET 306

Query: 316 TVPFVVLFV------GTISTIGSNS-MGLLLSKYPRMAGTASSLAGTLRFGTGSII 364
             P ++ F       G I  I  NS +        + AG  + L  T+ FG  S++
Sbjct: 307 IFPLLISFSILAAANGAIYPIVVNSALQQFTQNAAKAAGLQNFLQITIAFGASSLV 362