Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  124 bits (311), Expect = 5e-33
 Identities = 92/352 (26%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 18  LYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLAD 77
           L  +L  + A   +A  +++PA+P IA+   V+A  +Q  +  Y   + + Q ++GPL+D
Sbjct: 25  LLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLCQFIYGPLSD 84

Query: 78  SFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDRE 137
             GR+  +L GI +F + A+++A       L +    QG   A+A  + +++ RD +  +
Sbjct: 85  RVGRKMPLLIGIGIFILGALMAAEATSFNQLIFASLLQGLGTASAGALCRSIPRDHYFGD 144

Query: 138 DFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETLS 197
           +  R  S+V++ V   PLVAP +G   + ++G ++++WVL  F +LV  ++ +   E+L 
Sbjct: 145 NLVRFNSYVSMAVVFLPLVAPFLGSFASAYWGVQAVYWVLFGFGSLVWLLLCFGFKESLP 204

Query: 198 PENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYGVSPDG 257
              R+    +  + +Y  + ++      + S   +FAG+ AF      +Y     +SP  
Sbjct: 205 KHKREQ---QPILASYRHVLRHRSFRAYLLSLIATFAGIAAFEAIAGVLYGQYLQLSPFM 261

Query: 258 FGYLFGLNIVAMIALTTINGRFVKKIGSHNMLR-------FALFLQLMAGIGLFVSWVLD 310
               F   I   +    I GR  +K     +L+        ALF+ +     L V W L 
Sbjct: 262 VSCYFVAPIPGYLLGALIAGR--QKQAQRTVLQGVALLGAGALFMLIPGIFQLVVGWSLL 319

Query: 311 WGLWGTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLR-FGTG 361
            G        +LF      +        L  +PR AG A +L G L+ FG G
Sbjct: 320 IG-------SILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAG 364