Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Pseudomonas fluorescens FW300-N2E2

 Score = 87.4 bits (215), Expect = 9e-22
 Identities = 98/418 (23%), Positives = 168/418 (40%), Gaps = 14/418 (3%)

Query: 19  LIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGAL 78
           L+ +A P+    +      L D +M+ +L    +A  G+ A      +I  +GV      
Sbjct: 14  LLRLAGPLIASQLAHMLMVLTDTVMMARLSPEALAGGGLGAATYSFVSIFCIGVIAAVGT 73

Query: 79  LTAQYWGAGDRKGVREST-ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQ 137
           L A   GAGD +G    T A  WL         +LL+   P  +M   T++  ++A   Q
Sbjct: 74  LVAIRQGAGDVEGATRLTQAGLWLAWLMALMAGLLLWNLKPVLLMFGQTETNVLSA--GQ 131

Query: 138 YLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMG 197
           +L+   F +       ++     A+ +       S  G V+N +LN+ LI G FG P +G
Sbjct: 132 FLLALPFALPGYLSFMALRGFTSAIGRATPVMVISLGGTVANFLLNYALITGMFGLPKLG 191

Query: 198 IQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFNF 257
           + G  + T +        L  +++      A+   +  +  +   +    RL LP    +
Sbjct: 192 LMGIGLVTAIVANCMALALAWHIHRHPAYRAYPLLEGLSRPNRQYLKELWRLGLPIGGTY 251

Query: 258 LIWAAGLFTYHAI-MGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNY 316
            +   GLF + A+ MG  G   LAA  +   + S++  +  GMS A  + +G   GA   
Sbjct: 252 AV-EVGLFAFAALCMGTMGSTSLAAHQIALQIVSVAFMVPAGMSYAITMRIGQHYGAGQL 310

Query: 317 ---EAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTAL-TPETRELSEKFMLILCL 372
                     IG  A ++L     A+  +L+   ++G F     P  R++    + +L +
Sbjct: 311 LMARLAGRVGIGFGAAAML---AFAMVFWLLPHQLVGLFLDHDDPAFRDVINLAVSLLAV 367

Query: 373 GIVLRSF--PMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVLKVEPEWIY 428
                 F    T  +G +R   D K      +   W IG P A + A  L   P  ++
Sbjct: 368 AAWFELFDGTQTIAMGCIRGLKDAKTTFLVGLGCYWLIGAPAAWWMAFHLNWGPTGVW 425