Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 90/402 (22%), Positives = 167/402 (41%), Gaps = 19/402 (4%)

Query: 19  LIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGAL 78
           L+A+ALPI +  +  ++ G VD +M G++G  ++AAV +         +++ G       
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60

Query: 79  LTAQYWGAGDRKG----VRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNAL 134
             AQ +GAG        VR++  L  +V          L LF  + I+ +     ++   
Sbjct: 61  KVAQRFGAGTFAEIGPLVRQALWLALVVG-----LIASLALFSAEPILHIMNVDPELIGP 115

Query: 135 GSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFP 194
             +YL      + AVA    +      + +   +      G+  N+ LN+I I+G  G P
Sbjct: 116 CMEYLRGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVP 175

Query: 195 AMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPK---ISRFLRLSL 251
           AMG  G   AT +   +    +  +    +   A+    + +  DWP+   I R L + L
Sbjct: 176 AMGGVGCGWATAIVMWVMALGMAGW---ARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGL 232

Query: 252 PTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQL 311
           P        ++       ++G  G   +A   +     S+   +   +  A  V VG  L
Sbjct: 233 PIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQAL 292

Query: 312 G-AKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLIL 370
           G A+  EA +   +G+   ++    + A  ++ ++ P+   +TA  P   E++   ++  
Sbjct: 293 GRAQPREARFAAGVGM-GTALAYACLSASLMFALRGPIAAIYTA-DPVVIEVASMLIVYA 350

Query: 371 CLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPL 412
            L     +  +TA  G LR   D +  +   + A W IG+P+
Sbjct: 351 ALFQFSDAIQVTA-AGALRGYQDTRVTMILTLFAYWGIGLPV 391



 Score = 35.0 bits (79), Expect = 5e-06
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 17/171 (9%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTI------MLV 70
           +RL+ I LPI +     SS   V  L++G LG   +A   +A   + +  +      M V
Sbjct: 225 KRLLGIGLPIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAV 284

Query: 71  GVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQ 130
            V  G AL  AQ   A    GV   TAL       +A  +  L       I ++ T    
Sbjct: 285 TVRVGQALGRAQPREARFAAGVGMGTALA------YACLSASLMFALRGPIAAIYTADPV 338

Query: 131 VNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVS---TFFS--GIGI 176
           V  + S  ++  +   F+ A   + A  LR      V+   T F+  GIG+
Sbjct: 339 VIEVASMLIVYAALFQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGL 389