Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., MATE family efflux transporter from Pseudomonas fluorescens FW300-N2E3

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 96/431 (22%), Positives = 168/431 (38%), Gaps = 33/431 (7%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           + L+ +ALPI +  +  ++ G VD +M G++   ++AAV +         +++ GV    
Sbjct: 24  KNLLGLALPIMIAQLATTAMGFVDAVMAGRVSPRDLAAVALGNSIWIPIYLLMTGVLLAT 83

Query: 77  ALLTAQYWGAGDRKGVRE-STALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALG 135
               AQ +GA     +   +    WL        T    L   + I+       Q+    
Sbjct: 84  TPKIAQRFGAKQHDEIAPLARQALWLA--LCVGLTGSGLLLSAEPILHWMKVDPQLIEPS 141

Query: 136 SQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPA 195
             YL   +F    +A    +     AM +   S      G++ N+ +N+ LI+G FG PA
Sbjct: 142 MGYLHGIAFGFPGIAFYYVLRCYSDAMGRTRPSMVIGVGGLLLNIPVNYALIYGHFGLPA 201

Query: 196 MGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVID---WPKISRFLRLSLP 252
           +G  G   A   SG +      S     +    +    +    D   W  I R + + LP
Sbjct: 202 LGGVGCGWA---SGIVMWFMALSMAGWTRWAPFYAPTRVLVRFDRPQWAVIKRLVGIGLP 258

Query: 253 TTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLG 312
                   ++       ++G  G   +A   +   + S+   +   +  A  V VG  LG
Sbjct: 259 IGIAVFAESSIFAVIALLIGSLGSTVVAGHQIALNISSLLFMIPYSLGMAVTVRVGQALG 318

Query: 313 AKN-YEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLILC 371
           A N Y+A +   +G+ A  V      ++ + L++ P+   +TA   +   +    MLI+ 
Sbjct: 319 AGNPYQASFAAKVGLGAALVFAAFSASL-ILLLREPIASIYTA---DKTVIQIASMLIVY 374

Query: 372 LGIVLRSFPMTAI-VGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVLKVEPEWIYLL 430
             +   S  +  I  G LR   D +  +   + A W IG+P+               Y+L
Sbjct: 375 AALYQFSDAIQVICAGALRGYQDTRATMILTLFAYWGIGLPVG--------------YVL 420

Query: 431 FLTEEVVKWFG 441
            LT+    WFG
Sbjct: 421 GLTD----WFG 427



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 13/155 (8%)

Query: 242 KISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMST 301
           ++   L L+LP     L   A  F    + G+   + LAA+++   +      L+ G+  
Sbjct: 22  ELKNLLGLALPIMIAQLATTAMGFVDAVMAGRVSPRDLAAVALGNSIWIPIYLLMTGVLL 81

Query: 302 AAAVLVGNQLGAKNYEAV---YYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPE 358
           A    +  + GAK ++ +     QA+ +  C  L G     GL L   P+L  +  + P+
Sbjct: 82  ATTPKIAQRFGAKQHDEIAPLARQALWLALCVGLTG----SGLLLSAEPIL-HWMKVDPQ 136

Query: 359 TRELSEKFMLILCLGIVLRSFPMTAIVGVLRAGGD 393
             E S  ++  +  G     FP  A   VLR   D
Sbjct: 137 LIEPSMGYLHGIAFG-----FPGIAFYYVLRCYSD 166