Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., MATE efflux family protein from Synechococcus elongatus PCC 7942

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 97/413 (23%), Positives = 178/413 (43%), Gaps = 16/413 (3%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           ++ + +A+P+    +  ++ G VD +M+G+LG   +AA G+A+           GV    
Sbjct: 9   QQFLQLAIPLAAAQVAQAAVGFVDTVMMGRLGPEPLAAGGLASALFQFILATASGVVMAV 68

Query: 77  ALLTAQYWGAG-DRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALG 135
           + L A+  GAG D K    +    WL  +      V+L +    ++M +   S    AL 
Sbjct: 69  SPLVAEAQGAGKDYKIAAIARQGLWL--SVLLGLPVMLIISQLARLMPVLGQSATTIALA 126

Query: 136 SQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPA 195
             Y +   + +      + +   + A+ +  +       G + N + N++L +G+ GFP 
Sbjct: 127 RDYWMAVLWGIIPGLGFAMLRGYVAALEQARIILPLVLFGTLVNGLGNYLLGYGQLGFPR 186

Query: 196 MGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFG-WQDIKAVIDWPKISR-FLRLSLPT 253
           + + G  +++ L   +    L +Y   +  L  +  WQD + +   P I R  L+L    
Sbjct: 187 LELTGLGLSSALGLWVMFLGLLAYTAWQPKLRRYPFWQDWRRL--QPSICRQILQLGWAI 244

Query: 254 TFNFLIWAAGLFTYHAI-MGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLG 312
                +   GLFT   I MG  GV+ LAA   ++    +   + +G S A  V VG  LG
Sbjct: 245 AVTVAV-EFGLFTIITILMGAIGVEALAAHQTVSQTIILIFMVPLGCSFAVTVRVGWWLG 303

Query: 313 AKN-YEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETR----ELSEKFM 367
            ++   A     +GV A ++ + +++AI L L    ++G +  L          L+   +
Sbjct: 304 RQDGLGARRAGLVGVGAIALWM-LLLAIPLALFPRAIVGIYVDLNNPVNAGLLNLALPML 362

Query: 368 LILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVL 420
            +  L +VL      A +G L    D +  L   ++A W +G+  +A     L
Sbjct: 363 RVASLALVLDGVQRVA-MGALHGLQDTRIPLLLSLLAFWMVGVGSSAMLGFQL 414



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 242 KISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMST 301
           ++ +FL+L++P     +  AA  F    +MG+ G + LAA  + + +    L+   G+  
Sbjct: 7   ELQQFLQLAIPLAAAQVAQAAVGFVDTVMMGRLGPEPLAAGGLASALFQFILATASGVVM 66

Query: 302 AAAVLVGNQLGA-KNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETR 360
           A + LV    GA K+Y+       G+   SVL+G+ V   L + Q+  L      +  T 
Sbjct: 67  AVSPLVAEAQGAGKDYKIAAIARQGLW-LSVLLGLPVM--LIISQLARLMPVLGQSATTI 123

Query: 361 ELSEKFMLILCLGIV 375
            L+  + + +  GI+
Sbjct: 124 ALARDYWMAVLWGII 138