Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 18/343 (5%)

Query: 19  LIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGAL 78
           L+ + LP  L  +      LVD   + QLG   +AA+      T V + + VG+  G + 
Sbjct: 16  LLKMTLPNMLGILTILGFSLVDTFFVSQLGTEALAAISFTFPVTLVLSSIAVGIGAGVST 75

Query: 79  LTAQYWGAGDRKGVR----ESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNAL 134
              +  G+G     +    ++  LT+ +    A     L L F   + SL   +EQ   L
Sbjct: 76  NLGRLIGSGHAPDAKVFLHDALLLTFAIVGTLAS----LGLMFIDPLFSLLGANEQSLPL 131

Query: 135 GSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFP 194
             +Y+++       +  +     GLR+            +  + N++L+ +LIFG   FP
Sbjct: 132 IHEYMLVWYLGSPLLVLLMVGNQGLRSTGDTKSPAKIMALAAIINLILDPLLIFGLGPFP 191

Query: 195 AMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKIS----RFLRLS 250
            + IQGAAIA+V+S  + ++     L  K+H++A         I WP++     +   ++
Sbjct: 192 RLEIQGAAIASVISWVLAMSLSSYLLIVKRHMLAL------TEIAWPRLKDNWRKLAHIA 245

Query: 251 LPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQ 310
            P     L+         A++ +     +AA    T +ES+ L +++ +S++    V   
Sbjct: 246 QPAALMNLMNPIANAVIMAMLARIDHGAVAAFGAGTRLESVLLIVVMALSSSLMPFVAQN 305

Query: 311 LGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFT 353
           LGA  ++      +      +L   ++ + L L+  P+ G F+
Sbjct: 306 LGAGQHQRARDALMMSLRFVLLFQFLLYLPLLLLAGPIAGLFS 348



 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 14  DFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVT 73
           D +R+L  IA P  L N+M      V + ML ++    +AA G   R   V  I+++ ++
Sbjct: 236 DNWRKLAHIAQPAALMNLMNPIANAVIMAMLARIDHGAVAAFGAGTRLESVLLIVVMALS 295

Query: 74  TGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNA 133
           +      AQ  GAG  +  R++  ++      F F   L  L     I  L +D  +V  
Sbjct: 296 SSLMPFVAQNLGAGQHQRARDALMMSLRFVLLFQFLLYLPLLLLAGPIAGLFSDEPKVVE 355

Query: 134 LGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFG--KF 191
             + Y+I        +  V   A  L A H+P  S       ++ NV   ++L+      
Sbjct: 356 WLTFYIIALPAAYGPLGVVIITATALNAFHRPLAS-------LIINVCRLFLLMLPLCAL 408

Query: 192 GFPAMGIQGAAIATVLSGAI-EIACLY 217
           G    G++G  +A  ++ A+  IAC Y
Sbjct: 409 GSFLYGVKGLMVALPVTNALMGIACYY 435