Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 83/322 (25%), Positives = 143/322 (44%), Gaps = 21/322 (6%)

Query: 38  LVDVLMLGQLGEAEIAA-VGVAARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVREST 96
           L+D+  L  LGEAE+AA VG A   +F TT + +G++       ++  GA +    +   
Sbjct: 34  LLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQVSRAIGAREIDNAKRLL 93

Query: 97  ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLIITSFTMFAVACVSSMA 156
             + LV+   +    LL       +++L   + Q   L + YL I   ++  +    ++ 
Sbjct: 94  MSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAELAADYLYILVPSLPFICLAMALG 153

Query: 157 VGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQGAAIATVLSGAIEI--- 213
             LRA+    +S   + +G   N+VL+ ILIF      AMGI+GAA+A+VL+    +   
Sbjct: 154 AALRAVGDAKLSMVSTLVGGGVNLVLDPILIF----VLAMGIEGAAVASVLARLSVMLVA 209

Query: 214 --ACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIM 271
                  +  G K        D+K +      +    ++ P    F+  A   F      
Sbjct: 210 GRGVFVKHGLGSKPTRDAFVGDLKPIFAIAGPAMITNVATPIGNGFMTRAIAEF------ 263

Query: 272 GQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAVY-YQAIGVTACS 330
           G   V G A L  +TPV   +  ++  +S A   +VG   GA+ Y+ +       +  C+
Sbjct: 264 GDAYVAGWAVLGRLTPV---AFGMIFALSGAIGPIVGQNFGARRYDRLRDCLTQSLLFCT 320

Query: 331 VLVGIVVAIGLYLVQIPVLGAF 352
           V V + +A+ L+L Q  ++ AF
Sbjct: 321 VYV-VGMALVLFLAQDLIVSAF 341



 Score = 37.7 bits (86), Expect = 9e-07
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 33/161 (20%)

Query: 270 IMGQTGVQGLAALSVMTPVESISLSLL-----------------------IGMSTAAAVL 306
           +M  T   G++AL ++  ++   LSLL                       IG+S A    
Sbjct: 17  VMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQ 76

Query: 307 VGNQLGAK---NYEAVYYQAIGVT-ACSVLVGIVVAIGLYLVQIPVLGAFTALTPETREL 362
           V   +GA+   N + +   ++ VT A S LV ++V++      IP L      T +T EL
Sbjct: 77  VSRAIGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSL-----NIPALLTLVGATGQTAEL 131

Query: 363 SEKFMLILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIV 403
           +  ++ IL   +      M A+   LRA GD K  +   +V
Sbjct: 132 AADYLYILVPSLPFICLAM-ALGAALRAVGDAKLSMVSTLV 171