Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., multidrug resistance protein NorM from Phaeobacter inhibens DSM 17395

 Score =  113 bits (282), Expect = 1e-29
 Identities = 101/406 (24%), Positives = 181/406 (44%), Gaps = 22/406 (5%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           R +  + LP+   ++   + GL D +MLG  G   +AAV + +  T+  TI L+G     
Sbjct: 18  RAIAVLGLPLIGGHVAQFAIGLTDTVMLGWYGVEALAAVTLGS--TYFFTIFLLGSGFAF 75

Query: 77  ALL--TAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNAL 134
           A++   A   GAG+ + +R ST +   +S  +    V+  L++ + I+ L     +V   
Sbjct: 76  AVMPMVAAAAGAGEERQIRRSTRMALWLSLAYGLL-VMPLLWWSEPILLLLGQEAEVAHG 134

Query: 135 GSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFP 194
            ++YL I  + +F       +   L A+ +  +    S +    N ++N+ LIFG +G P
Sbjct: 135 AAEYLRIAGWALFPALLYMVLKSYLAALERTQIVLLVSVLAAALNALINYALIFGNWGAP 194

Query: 195 AMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTT 254
            +G+ GAA+A++ +     AC++   Y  K L            DW  +SR LRL LP  
Sbjct: 195 ELGVTGAALASLATNV--FACIFVLFYALKALPEHELLKNFQRPDWEMLSRVLRLGLPIG 252

Query: 255 FNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAK 314
              L   +       +MG  G   L A  +   +  ++  + +G+S AA +  GN  G  
Sbjct: 253 LTNLSETSLFAASAMMMGWLGTVALGAHGIALSLGGLAFMMHLGLSNAATIRAGNAFGRG 312

Query: 315 NYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLILCLGI 374
           + + +   A  V A S+ + ++  I    V   ++  F  L+P+  + +E    I+ +G 
Sbjct: 313 DRDHMARGARVVMAMSLGLSVLGMILFLAVPEALISLF--LSPDDPDRAE----IVLIGS 366

Query: 375 VLRSFP---------MTAIVGVLRAGGDVKFCLGQDIVAQWCIGIP 411
           VL +               +G+LR   D    +    ++ W +GIP
Sbjct: 367 VLLAAAALFQLMDGMQVIALGLLRGVQDTGVPMVIAALSYWAVGIP 412



 Score = 54.3 bits (129), Expect = 8e-12
 Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 27/196 (13%)

Query: 14  DFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVT 73
           +   R++ + LPI L N+  +S      +M+G LG   + A G+A     +  +M +G++
Sbjct: 239 EMLSRVLRLGLPIGLTNLSETSLFAASAMMMGWLGTVALGAHGIALSLGGLAFMMHLGLS 298

Query: 74  TGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSL--------- 124
               +     +G GDR  +     +   +S   +   ++LFL  P+ ++SL         
Sbjct: 299 NAATIRAGNAFGRGDRDHMARGARVVMAMSLGLSVLGMILFLAVPEALISLFLSPDDPDR 358

Query: 125 ------------------TTDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPG 166
                               D  QV ALG    +  +     +A +S  AVG+ A +  G
Sbjct: 359 AEIVLIGSVLLAAAALFQLMDGMQVIALGLLRGVQDTGVPMVIAALSYWAVGIPASYLLG 418

Query: 167 VSTFFSGIGIVSNVVL 182
            +    G+G+   +VL
Sbjct: 419 FTFEMGGLGVWLGLVL 434